SHOGoiN CELLBLAST

CELLBLAST Search Result Examples

This page shows example CELLBLAST query search results. CELLBLAST can characterize cell types across different next-generation sequencer platforms. For example, when Reg4-positve intestinal cell (GSM1524296) is given as a query, top hit comes from small intestine regardless of platforms and GSEs of database profile.

Top 100 results of example queries (executed in August 2018)

GSM id Source Tissue Database Gene Set
GSM1901473 H. sapiens: Alpha cell (Pancreas) H. sapiens, SINGLECELL: HiSeq2000/2500 MF: transcription factor activity, protein binding
GSM1901455 H. sapiens: Pancreatic islet cell (Pancreas) H. sapiens, SINGLECELL: HiSeq2000/2500 MF: transcription factor activity, protein binding
GSM1524296 M. musculus: Reg4-positive intestinal cell (Small intestine) M. musculus, SINGLECELL: all MF: transcription factor activity, protein binding

Reference
Bioinformatics. 2007 Nov 15;23(22):3103-4. Epub 2007 Sep 25.
CellMontage: similar expression profile search server.
Fujibuchi W, Kiseleva L, Taniguchi T, Harada H, Horton P.