SHOGoiN CELLBLAST

Usage

Profile search in CELLBLAST can be run by selecting the database to be searched and specifying the query profile.


STEP 1
   Select database by specifying the organism and platform. Currently, CELLBLAST deals with H. sapiens and M. musculus as organism, and HiSeq 2000/2500, NextSeq 500, MiSeq, and GenomeAnalyzer IIx as platform.

STEP 2
   Specify genes to be used for calculation according to Gene Ontology (GO).

STEP 3
   Input a gene expression profile in CM format from user's original data or files via "Data Downloads" on the top page on SHOGoiN database.

STEP 4
   Select gene assignment resource of the query data (e.g., Ensembl).

STEP 5 (Optional)
   Set parameters for searching.